FastQCFastQC Report
Wed 8 May 2024
EGAF00005318960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3301603
Total Bases245.2 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG157810.4779799388357716No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN147010.44526855591056835No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG58920.17845876684749803No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT46580.1410829830237009No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA34790.10537305666368729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)