EGAF00005318962 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318962
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3399962
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	16016	0.47106408836334057	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	15011	0.44150493446691463	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5935	0.17456077450277385	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4406	0.12958968364940548	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3646	0.10723649264315308	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4965	36.50963	32
GCGGCAC	5095	35.607903	33
TCGCCGG	4975	34.420593	48
CGGCACC	5340	33.873444	34
CCGTCGC	5080	33.752037	45
CCCGTCG	5080	33.72346	44
TAGTCCG	365	31.836018	6
ACCCGCG	5780	31.662832	25
CCCCCGA	5780	31.535704	19
GCACCCC	6080	29.859133	36
CACCCCC	6095	29.80847	37
GACGTAT	425	29.615107	44
CCCCGAC	6295	28.922737	20
TGGCCGT	1525	28.852734	70
TATCGGA	240	28.480751	8
GGCACCC	6370	28.474123	35
AGTCCGC	6640	28.051823	7
TTATCGG	245	27.899511	7
CGTCGCC	6175	27.791668	46
CGTATCA	460	27.409437	46