FastQCFastQC Report
Wed 8 May 2024
EGAF00005318964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3375780
Total Bases250.7 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG154640.45808672366090203No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN146390.4336479272938403No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG57960.1716936530224126No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT47000.1392270823335644No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA37840.11209261267025694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)