EGAF00005318966 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318966
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5076844
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	23550	0.4638708615037216	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	14227	0.28023315272243937	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	12208	0.24046435147505024	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	11504	0.22659746882118104	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	9799	0.19301361239384154	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	7966	0.15690850457488945	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	6630	0.13059294317493308	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6391	0.12588529409215646	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	6269	0.12348222635952572	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	5966	0.11751395158094281	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	5605	0.11040323476553544	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	5602	0.11034414293604451	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	5503	0.10839411256284416	No Hit
GCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCTT	5434	0.10703500048455301	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2575	42.870453	70
CGCGGCA	7415	36.206917	32
GCGGCAC	7735	34.99091	33
CGGCACC	7930	33.87969	34
TCGCCGG	7570	32.761368	48
ATGGCCG	2655	32.70499	69
CTTACCC	1735	32.68868	70
CCCGTCG	7705	32.11975	44
CCGTCGC	7735	31.873503	45
GCACCCC	8550	31.567396	36
CCCCCGA	8625	31.208641	19
ACCCGCG	8865	30.408443	25
CACCCCC	9060	29.7666	37
GGCACCC	9105	29.557896	35
GTTCCGT	450	29.223585	1
CCCCGAC	9395	28.694355	20
TACGGGT	2215	28.339819	6
GTACGGG	2240	27.869001	5
GTGCCGT	775	27.685505	1
GTCGGTT	375	27.591852	4