EGAF00005318991 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318991
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5204688
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	17906	0.3440359921670617	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	15330	0.29454215122981436	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	14801	0.28437823746591534	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	10736	0.20627557309871408	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	10444	0.20066524640862238	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	6925	0.13305312441398984	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6693	0.12859560457802657	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	5488	0.10544340025761391	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	7545	50.90544	9
CCGAACT	1240	47.39051	67
TGGCGCG	8225	46.990967	15
CGCGGTG	8530	45.350956	10
GCCGGTT	1320	42.873684	3
CGGTTCA	1375	41.901424	5
ACTCTTC	4905	41.880318	5
TGTAGTC	9245	41.843605	26
GTAGTCC	9245	41.71909	27
TCTGGTC	4840	41.59289	10
TAGTCCC	9280	41.48199	28
CTACTCG	9280	41.414387	37
TACTCGG	9250	41.118385	38
CGTGCCT	9435	41.02708	20
TCTACGG	695	40.462364	5
GGACTCT	5310	40.112328	3
CCTGTAG	9670	40.111427	24
GGGGACT	5300	39.486027	1
ACTCGGG	9915	39.368534	39
CCGGTTC	1475	39.29315	4