EGAF00005318995 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318995
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5401920
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	18420	0.34098987026834904	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	16325	0.3022073633078609	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	16022	0.29659824654937506	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	11510	0.21307238907647652	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	11141	0.20624148450921154	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	7641	0.1414497067709259	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6913	0.12797301700136246	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	6437	0.11916133522895563	No Hit
GGGGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTC	5546	0.10266719981043776	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	7870	0.0	51.77815	9
CCGAACT	1300	0.0	47.074593	67
TGGCGCG	8650	0.0	46.820885	15
CGCGGTG	8855	0.0	46.13483	10
GCCGGTT	1290	0.0	45.496723	3
CGGTTCA	1350	0.0	43.475048	5
TACTCGG	9730	0.0	42.225117	38
CTACTCG	9765	0.0	42.150425	37
CGTGCCT	9615	0.0	41.812206	20
GTAGTCC	9700	0.0	41.700424	27
ACTCTTC	4860	0.0	41.667118	5
TAGTCCC	9775	0.0	41.40445	28
TCGCGTA	60	2.3561188E-7	41.353405	60
TGTAGTC	9950	0.0	41.114094	26
TCTACGG	665	0.0	40.773987	5
GGGGACT	5475	0.0	40.24978	1
CCTGTAG	10085	0.0	40.21312	24
ACTCGGG	10450	0.0	40.14168	39
CTTAGGC	1490	0.0	40.12182	18
TCTGGTC	4935	0.0	39.99919	10