EGAF00005319000 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319000
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3791659
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	23340	0.6155616842126361	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8849	0.23338069167084913	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCG	7142	0.18836082042187866	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	7035	0.18553883669391155	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	6709	0.17694101711150712	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	6671	0.1759388172828833	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	6646	0.17527947529036764	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	6202	0.1635695615032892	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	5384	0.14199589150817624	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	5053	0.13326620352726867	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4498	0.11862881129342065	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCAT	4404	0.11614968540156169	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4256	0.11224638080586888	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	4158	0.10966176019520743	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4008	0.10570570824011336	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2040	44.742706	70
GTTCCGT	540	42.613503	1
CGCGGCA	6785	36.12471	32
GTCGGTT	450	35.32804	4
GCGGCAC	6940	35.32678	33
ATGGCCG	2025	35.30259	69
CGGCACC	7030	34.784157	34
TCGCCGG	6765	33.964577	48
CCGTCGC	6830	33.58991	45
CCCGTCG	6840	33.47388	44
GCACCCC	7520	32.627167	36
GTGCCGT	770	32.601593	1
CACCCCC	7705	31.987803	37
CCCCCGA	7795	31.667725	19
AGGACCG	730	31.089638	70
GGCACCC	7900	31.049944	35
ACCCGCG	8000	30.536716	25
GTCCGTT	370	29.890945	2
TCGCCGT	425	29.533207	1
ACCGGTT	225	29.185188	3