FastQCFastQC Report
Wed 8 May 2024
EGAF00005319015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3168525
Total Bases236.1 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT151240.47731988859169483No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG92900.29319636108283825No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN77010.24304684356285652No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA41360.13053392351330667No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC39950.12608390339353484No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC38440.12131827900994942No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT33150.10462281345420976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)