EGAF00005319016 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319016
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3169032
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18430	0.5815656011046906	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8657	0.2731749000956759	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7844	0.24752037846257155	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5673	0.17901365464280575	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5262	0.16604439462902237	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4587	0.1447445150443416	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4476	0.14124186817930523	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4442	0.14016898535578057	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4219	0.1331321362485453	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4060	0.1281148312797094	No Hit
AGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	3748	0.11826955360501251	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3657	0.11539801428322592	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3526	0.11126425987493974	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3425	0.10807716678152823	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	3351	0.10574206887150397	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5705	0.0	35.907207	32
CGTTGCG	115	1.8189894E-12	35.814514	1
GCGGCAC	5805	0.0	35.3769	33
CGGCACC	6010	0.0	34.362507	34
TCGCCGG	5895	0.0	33.08676	48
CCGTCGC	5890	0.0	33.0008	45
CCCGTCG	5955	0.0	32.84222	44
TAGTCCG	350	0.0	32.334354	6
AGGACCG	895	0.0	31.279253	70
GCACCCC	6685	0.0	31.190392	36
GGCGATC	1185	0.0	30.374249	70
CCCCCGA	6860	0.0	30.228672	19
GGCACCC	6970	0.0	29.798033	35
ACCCGCG	7005	0.0	29.422188	25
CACCCCC	7135	0.0	29.245188	37
TATCGGA	290	0.0	28.381699	8
CGGAATT	280	0.0	28.170527	11
TTATCGG	280	0.0	28.170527	7
GTGCCGT	500	0.0	27.457792	1
ACCGGTT	150	3.8198777E-11	27.436077	3