FastQCFastQC Report
Wed 8 May 2024
EGAF00005319017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3169032
Total Bases236.2 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT155710.49134877779713176No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG97090.3063711568706154No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN77470.24445950687780998No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA43040.13581434330735695No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC42890.1353410126499196No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC40340.12729439147348465No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT33520.10577362424866647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)