EGAF00005319021 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319021
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3220194
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	9349	0.29032412332921553	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	8258	0.25644417696573557	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7780	0.24160035078631906	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	5725	0.17778431982669368	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	4073	0.12648306282168092	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	3995	0.12406084850788493	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	3804	0.11812952884205113	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGAACT	645	48.596447	67
GCGCGGT	3645	47.247047	9
TGGCGCG	3820	44.722664	15
GTACGCA	495	44.07221	65
TCTACGG	440	42.103317	5
GGGGACT	3225	41.4457	1
GTCTACG	455	40.71339	4
AGTACGC	595	40.204315	64
CGCGGTG	4345	39.63532	10
TCTGGTC	2505	39.44148	10
TACGGCC	480	39.30942	7
GCCGGTT	775	38.952545	3
ACTCTTC	2595	38.86737	5
CGGTTCA	765	38.566677	5
GTTGATC	840	38.3899	10
CTACTCG	4625	37.78056	37
TACTCGG	4655	37.3342	38
GCGGTAT	140	36.909714	1
TGTAGTC	4710	36.707233	26
GGACTCT	3150	36.59179	3