EGAF00005319039 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319039
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3998640
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	19324	0.48326430986535424	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	14612	0.36542424424304265	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	12470	0.3118560310505572	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	7188	0.17976111878038534	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6745	0.1686823519996799	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	5675	0.14192325390632815	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	5512	0.13784686793509796	No Hit
GGGGACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGA	5383	0.13462077106216114	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	5290	0.13229498029329972	No Hit
CGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	4312	0.10783666446591841	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	1525	58.79738	5
TACGGCC	1570	57.553844	7
GTCTACG	1560	57.478207	4
GCGCGGT	6515	53.883648	9
CTACGGC	1685	53.419704	6
CGGCATA	220	50.592037	1
CCGAACT	1065	50.362026	67
CGGTTCA	1070	49.50347	5
CGCGGTG	7125	49.464817	10
TGGCGCG	7125	49.365166	15
GCCATAC	1855	47.958206	11
ACTCTTC	5195	47.248577	5
GCCGGTT	1130	47.17957	3
ACGGCCA	1920	46.88194	8
GGGGACT	4905	46.801506	1
CGAACTT	1185	45.64976	68
CGGCCAT	2005	45.41244	9
GGACTCT	5445	44.632473	3
TCTGGTC	5340	44.53987	10
GTAGTCC	7990	44.27509	27