FastQCFastQC Report
Wed 8 May 2024
EGAF00005319046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3599265
Total Bases268.7 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG139760.3883015004452298No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCAC69500.19309497911379128No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG68280.18970539818546286No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN67280.18692705316224284No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC52510.14589089716928316No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG42610.11838528143940498No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT42240.11735729378081357No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG41500.11530131846363076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)