EGAF00005319050 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319050
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3664554
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15247	0.41606700296952914	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7130	0.19456665122140374	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6850	0.18692588511453237	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	6654	0.18157734883972237	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5299	0.14460149857254118	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4217	0.11507539525955955	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4038	0.11019076264123819	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4035	0.11010889729009316	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2130	0.0	45.74536	70
AGGACCG	1440	0.0	41.58579	70
ATTGCGT	60	8.880646E-6	36.647774	68
GCGGCAC	4665	0.0	32.23784	33
ATGGCCG	2430	0.0	32.11285	69
CGCGGCA	4740	0.0	31.640017	32
CCGTCGC	4595	0.0	30.097523	45
CGGCACC	5020	0.0	29.904833	34
TCGCCGG	4700	0.0	29.719145	48
CCCGTCG	4725	0.0	29.536108	44
TATCGGA	260	0.0	29.077934	8
GCACCCC	5555	0.0	27.549776	36
GTTATCG	290	0.0	27.254866	6
CACCCCC	5610	0.0	27.233337	37
CGGAACG	1675	0.0	26.6422	46
GTATGGC	2675	0.0	26.51416	67
AACGGCG	1685	0.0	26.338547	49
TAGCGTC	445	0.0	26.256275	11
TATGGCC	2760	0.0	26.025227	68
TCGGAAC	1720	0.0	25.721779	45