FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005319098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3314764
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN388571.172240316354347No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG62710.18918390570188406No Hit
GTGGGGTGGGGGTGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGG55530.16752323845679512No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT52060.15705492155700979No Hit
GTGGGGTGGGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGGCGG48210.14544021836848717No Hit
TGGGGTGGGGGTGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGG47920.14456534462181922No Hit
GGGGTGGGGGTGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGGC47100.14209156368296508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)