EGAF00005319108 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319108
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3704420
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18152	0.4900092322144898	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	10234	0.2762645704320784	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7875	0.21258388627639416	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7554	0.20391856215008017	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7001	0.1889904492471156	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5835	0.1575145366886044	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4741	0.12798224823319168	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4190	0.11310812488864654	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4029	0.1087619654358847	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3888	0.10495570156731687	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3841	0.10368694694446094	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5345	0.0	36.440376	32
GCGGCAC	5510	0.0	35.47997	33
GTTCCGT	425	0.0	34.552647	1
CGGCACC	5660	0.0	34.54436	34
TCGCCGG	5235	0.0	33.254944	48
CCCGTCG	5330	0.0	32.897194	44
CCCCCGA	6210	0.0	32.163147	19
ACCCGCG	6215	0.0	32.039104	25
CCGTCGC	5470	0.0	31.934505	45
GCACCCC	6290	0.0	31.53637	36
TGGCCGT	1320	0.0	31.205997	70
TTCCTCG	895	0.0	30.233402	4
CCCCGAC	6685	0.0	29.827145	20
CACCCCC	6655	0.0	29.759758	37
GGCACCC	6730	0.0	29.312954	35
GTCGGTT	290	0.0	28.709702	4
ATGGCCG	1105	0.0	28.377693	69
AGGACCG	450	0.0	27.9078	70
AACGCGT	50	0.0075315465	27.75271	2
AGTCCGC	7425	0.0	27.034718	7