EGAF00005319118 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319118
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3344436
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	31417	0.9393811094008078	No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18471	0.5522904310323176	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7350	0.21976799675640377	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5841	0.17464828150396658	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5547	0.16585756163371043	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4740	0.14172793260208896	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4539	0.13571795064997505	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4500	0.13455183474881866	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1820	39.50491	70
CGCGGCA	5265	37.640953	32
GCGGCAC	5470	36.22043	33
CCGTCGC	5220	35.379574	45
AGGACCG	840	35.35403	70
CCCGTCG	5180	35.329327	44
TTCGTTG	390	35.292515	31
TCGCCGG	5250	35.09532	48
CGGCACC	5635	34.960808	34
TAGTCCG	330	32.6676	6
GCACCCC	6160	32.363007	36
CCCCCGA	6010	32.35859	19
ACCCGCG	6105	32.266823	25
CACCCCC	6410	30.834248	37
TATCGGA	230	30.759031	8
GGCACCC	6520	30.32192	35
CCCCGAC	6515	30.145124	20
ATGGCCG	1985	29.50255	69
CCGCGCG	7020	28.333208	27
TTATCGG	260	27.209911	7