EGAF00005319122 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319122
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3333990
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	31458	0.9435541198383919	No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18645	0.5592398297535386	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7324	0.21967672368543395	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5939	0.17813490742323762	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5501	0.1649974954933878	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4672	0.14013239391839807	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4438	0.13311377658601256	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4350	0.13047429656357698	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1740	0.0	41.003685	70
CGCGGCA	5420	0.0	36.622097	32
GCGGCAC	5635	0.0	35.277306	33
CGGCACC	5770	0.0	34.440773	34
TCGCCGG	5490	0.0	34.282413	48
CCGTCGC	5555	0.0	33.954987	45
CCCGTCG	5630	0.0	33.462925	44
TTCGTTG	455	0.0	32.516544	31
TAGTCCG	345	0.0	32.18671	6
ACCCGCG	6260	0.0	31.79006	25
GCACCCC	6520	0.0	30.896502	36
CACCCCC	6525	0.0	30.61273	37
CGACGTT	55	3.769926E-4	30.59299	3
CCCCCGA	6510	0.0	30.486994	19
ACGATCG	90	2.4852488E-7	29.910883	6
GGCACCC	6760	0.0	29.598162	35
ATGGCCG	1905	0.0	29.507793	69
AGGACCG	855	0.0	29.236588	70
CGTTGGA	520	0.0	29.20224	33
TTATCGG	220	0.0	29.06114	7