EGAF00005319126 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319126
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3179057
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17369	0.5463569857350781	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6138	0.19307612288801365	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5532	0.17401386637609834	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4575	0.14391059990431126	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3769	0.11855716962608724	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	3752	0.118022419855951	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	3701	0.11641817054554228	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3622	0.11393315690785034	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3394	0.10676121881425843	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5135	0.0	38.3108	32
AGGACCG	650	0.0	38.255894	70
GCGGCAC	5235	0.0	37.59506	33
CGGCACC	5465	0.0	36.034534	34
TAGTCCG	245	0.0	35.149582	6
ACGATCG	40	0.0026168267	34.44659	6
TGGCCGT	1435	0.0	34.30327	70
TCGCCGG	5330	0.0	33.87203	48
CCGTCGC	5300	0.0	33.599205	45
CCCGTCG	5345	0.0	33.364513	44
GCACCCC	5985	0.0	33.10585	36
TTCGTTG	475	0.0	32.79949	31
CCCCCGA	6075	0.0	32.626385	19
ACCCGCG	6220	0.0	31.536043	25
GGCACCC	6330	0.0	31.176525	35
CACCCCC	6335	0.0	31.126795	37
CCCCGAC	6375	0.0	31.047726	20
CGTTGGA	515	0.0	30.94922	33
CCCCCGT	5930	0.0	29.981379	42
GTTCCGT	485	0.0	29.939472	1