EGAF00005319130 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319130
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3170427
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17496	0.551849955857681	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6176	0.19480025876640591	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5403	0.17041868492792928	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4568	0.14408153854354636	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3860	0.1217501617290037	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	3714	0.11714510379832116	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	3660	0.11544186319382216	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3520	0.11102605421919509	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5185	0.0	40.152077	32
TGGCCGT	1540	0.0	39.511612	70
GCGGCAC	5325	0.0	39.117573	33
CGGCACC	5430	0.0	38.434765	34
TCGCCGG	5240	0.0	37.53592	48
CCGTCGC	5325	0.0	36.870564	45
CCCGTCG	5355	0.0	36.393036	44
CGAAACG	80	6.705886E-8	34.725346	37
CCCCCGA	6035	0.0	34.657276	19
GCACCCC	6135	0.0	34.28117	36
ACCCGCG	6205	0.0	33.559914	25
CCCCCGT	5865	0.0	33.365124	42
CACCCCC	6410	0.0	33.04596	37
ATGGCCG	1445	0.0	33.000816	69
CCCCGAC	6325	0.0	32.968674	20
GGCACCC	6465	0.0	32.51423	35
GTTCCGT	500	0.0	31.102663	1
CCGCGCG	6845	0.0	30.489943	27
AGGACCG	550	0.0	29.502	70
TCGCCGT	375	0.0	29.489933	1