EGAF00005319135 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319135
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3988146
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	13875	0.34790601948875494	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	11785	0.29550071637297126	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	8654	0.21699305893013945	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	8397	0.21054896184843785	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6521	0.1635095605827871	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4708	0.11804984070292311	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGGCC	1840	58.311493	7
GTCTACG	1925	56.27468	4
CTACGGC	1930	55.949562	6
TCTACGG	1925	55.915096	5
GCGCGGT	6575	52.5872	9
TGGCGCG	6965	49.24137	15
CCGAACT	1120	48.902702	67
GCCGGTT	1155	48.840237	3
CGCGGTG	7090	48.718582	10
GCCATAC	2220	48.167698	11
ACGGCCA	2280	47.2102	8
CGGCCAT	2355	45.70669	9
GAACGCG	2335	45.386673	24
CGGTTCA	1235	45.11888	5
GCCGAAC	1230	44.64612	66
CGAACTT	1280	43.80735	68
TGAACGC	2455	43.728622	23
CTGAACG	2465	43.405838	22
CCATACC	2495	43.27908	12
CCGGTTC	1295	43.02843	4