EGAF00005319138 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319138
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3974554
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	16207	0.4077690226375085	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7975	0.20065144416203679	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7499	0.18867525765155033	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6446	0.16218171900545317	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6194	0.15584138497048977	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5218	0.13128517061285366	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4705	0.11837806204167813	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4105	0.10328202862509857	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4900	36.955147	32
GCGGCAC	5040	35.869743	33
CGGCACC	5090	35.180527	34
TCGCCGG	4825	34.95013	48
CCGTCGC	4925	34.27257	45
CCCGTCG	4930	34.09533	44
TAGTCCG	310	33.49544	6
CCCCCGA	5715	31.985506	19
ACCCGCG	5740	31.565294	25
GCACCCC	5795	31.088087	36
CCCCGAC	6095	29.882244	20
CACCCCC	6100	29.654982	37
GGCACCC	6130	29.385437	35
GTTCCGT	500	28.48149	1
GATAGGC	2650	27.80544	40
AGTCCGC	6780	27.158646	7
TGGCCGT	1205	26.815557	70
ACGTATC	300	26.681961	45
ACCGGTT	195	26.625252	3
GTAGCGT	340	26.467968	10