EGAF00005319140 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319140
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3979184
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	16190	0.4068673376250005	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7861	0.19755306615627724	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7235	0.18182119751185166	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6682	0.167923875849923	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6320	0.15882653327918486	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4976	0.12505076417677594	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4816	0.12102983928363202	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4116	0.10343829287612738	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5015	0.0	34.93556	32
GCGGCAC	5165	0.0	33.92396	33
AGGACCG	700	0.0	33.066486	70
CGGCACC	5355	0.0	32.85528	34
TCGCCGG	5045	0.0	32.812	48
TGGCCGT	1505	0.0	32.431236	70
CCGTCGC	5045	0.0	32.29452	45
CCCGTCG	5140	0.0	32.028183	44
GTTCCGT	480	0.0	31.304426	1
GCACCCC	5880	0.0	30.11591	36
ACCCGCG	6005	0.0	29.544287	25
CCCCCGA	6090	0.0	29.399025	19
CGTACGT	145	2.1827873E-11	28.659784	19
CACCCCC	6330	0.0	28.147694	37
GGCACCC	6365	0.0	27.86585	35
TAGTCCG	410	0.0	27.862171	6
TTACCCG	460	0.0	27.843817	9
GATAGGC	2630	0.0	27.754099	40
CGCGCTT	475	0.0	27.692612	14
ATGGCCG	1405	0.0	27.305128	69