EGAF00005319166 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319166
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3375479
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	10357	0.30683052686744605	No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	9472	0.2806120257302741	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7700	0.22811577260590274	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7505	0.22233881472822078	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4611	0.1366028347384179	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4459	0.13209977013632732	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4443	0.13162576333610726	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3962	0.11737593390449177	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3896	0.11542065585358405	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCG	3399	0.10069681962174849	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2250	48.50447	70
ATGGCCG	2465	34.084026	69
CGCGGCA	2945	33.73268	32
CTTACCC	1605	32.870552	70
CGTACGT	140	32.044506	19
GCGGCAC	3180	31.57674	33
CGGCACC	3170	31.24967	34
TCGCCGG	3125	30.220636	48
CCGTCGC	3125	29.944687	45
CCCGTCG	3280	28.833998	44
GATAGGC	3425	28.370329	40
AGGACCG	620	28.364105	70
GTTCCGT	345	28.085163	1
TTATCGG	200	27.597342	7
ACCCGCG	3635	27.276754	25
TATGGCC	2890	27.234394	68
TCGGATA	500	27.016756	34
CCCCCGA	3700	26.954693	19
CGGATAG	510	26.492146	35
ATAGGCA	3660	26.466158	41