EGAF00005319182 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319182
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3725210
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	20188	0.5419291798314726	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9947	0.2670185036548275	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	8065	0.21649786186550557	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7764	0.20841778047412093	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6120	0.16428604025007987	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5811	0.15599120586490425	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5531	0.14847485108222086	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4742	0.12729483706958802	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4602	0.12353665967824631	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	4406	0.11827521133036796	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3846	0.10324250176500116	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1640	41.251835	70
CGCGGCA	6340	37.102562	32
GCGGCAC	6560	35.873753	33
CGGCACC	6750	34.82532	34
TCGCCGG	6420	33.90879	48
CCCGTCG	6565	33.15085	44
CCGTCGC	6550	33.079838	45
ACCCGCG	7370	32.04003	25
CCCCCGA	7435	31.908985	19
GCACCCC	7475	31.887444	36
CACCCCC	7665	30.793476	37
CCCCGAC	7730	30.744184	20
GGCACCC	7665	30.678444	35
ATGGCCG	1725	30.587276	69
AGTCCGC	8110	29.614113	7
CAGTCCG	7910	29.185019	6
CCGCGCG	8105	29.103193	27
GTCCGCC	8375	28.718273	8
TACGGGT	1495	28.621395	6
GATAGGC	3135	28.490742	40