EGAF00005319188 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319188
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3709238
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	20646	0.5566102795237189	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9975	0.268923158880611	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	8220	0.22160885874672911	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7649	0.2062148613812325	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6145	0.1656674497565268	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5880	0.1585231252348865	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5326	0.1435874430273819	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4617	0.12447300496759711	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4481	0.12080648370366097	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	4424	0.1192697799386289	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3859	0.10403754086418827	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1740	39.563377	70
CGCGGCA	6280	36.355473	32
GCGGCAC	6520	34.972153	33
CGGCACC	6660	34.505116	34
CCGTCGC	6375	34.31268	45
CCCGTCG	6430	34.221874	44
TCGCCGG	6450	34.018684	48
GCACCCC	7125	32.428604	36
CGTACGT	160	32.37027	19
CCCCCGA	7165	32.094685	19
AGGACCG	605	32.028534	70
ACCCGCG	7305	31.379326	25
CACCCCC	7375	31.108057	37
CCCCGAC	7550	30.279636	20
GGCACCC	7690	29.895248	35
ATGGCCG	1805	29.48534	69
GTTCCGT	420	28.997213	1
CGTCGCC	7675	28.562489	46
CCGCGCG	8025	28.49439	27
AGTCCGC	8095	28.346048	7