EGAF00005319198 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319198
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3773531
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13356	0.3539390560194152	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	9578	0.2538206258276399	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9443	0.25024307472232243	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6540	0.17331247576871636	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5496	0.1456460805542607	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	5480	0.14522207449733418	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	5086	0.13478092534551855	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4440	0.11766168079711019	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4103	0.10873105322309529	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4070	0.0	36.06756	32
GCGGCAC	4325	0.0	34.1872	33
CGGCACC	4355	0.0	33.876045	34
TGGCCGT	1200	0.0	33.001247	70
CCGTCGC	4140	0.0	32.950207	45
TCGCCGG	4185	0.0	32.291252	48
CCCGTCG	4315	0.0	31.843513	44
CCCCCGA	4690	0.0	31.69049	19
ACCCGCG	4810	0.0	30.99821	25
TATCGCG	45	0.0045366734	30.786442	10
GCACCCC	4865	0.0	30.477636	36
CCCCGAC	5010	0.0	29.740232	20
CCGCGCG	5125	0.0	29.031078	27
CCCCCGT	4685	0.0	28.648203	42
ATGGCCG	1075	0.0	28.187538	69
CACCCCC	5225	0.0	28.184736	37
GGCACCC	5375	0.0	27.6471	35
AGTCCGC	5470	0.0	27.162909	7
TACGGGT	1550	0.0	27.03709	6
CAGTCCG	5275	0.0	26.9852	6