EGAF00005319200 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319200
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3761491
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13426	0.3569329289901265	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	9694	0.2577169531975485	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9560	0.25415453606030164	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6393	0.16995919968969753	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	5421	0.14411838284339906	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5352	0.14228400386974208	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4950	0.13159675245800137	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4276	0.11367832596169976	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4127	0.10971713078670134	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	3870	37.124237	32
GCGGCAC	4115	35.004787	33
TCGCCGG	3875	34.780228	48
CGGCACC	4200	34.140633	34
CCGTCGC	4010	34.012615	45
CCCGTCG	4090	33.680412	44
TGGCCGT	1420	32.933624	70
ACCCGCG	4475	32.071865	25
CCCCCGT	4340	31.647036	42
CCCCCGA	4575	31.501001	19
CCCCGAC	4730	30.397913	20
GCACCCC	4910	29.780212	36
CCGCGCG	4905	29.339537	27
CACCCCC	5015	28.749985	37
TAGTCCG	395	28.053698	6
GGCACCC	5160	27.994848	35
AGTCCGC	5200	27.569841	7
GCGCGGG	5025	27.455893	62
GATAGGC	2875	26.963526	40
CGTCGCC	5095	26.708347	46