EGAF00005319202 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319202
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3766509
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13444	0.3569352947251686	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	9714	0.25790460078550187	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9627	0.25559476958637295	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6382	0.16944072083725276	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	5553	0.1474309499857826	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5412	0.1436874304561598	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	5052	0.13412950825286757	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4213	0.11185423956241708	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4184	0.1110842958293741	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4160	0.0	34.869896	32
TATCGCG	40	0.002545049	34.64268	10
GCGGCAC	4285	0.0	33.856293	33
TGGCCGT	1310	0.0	33.592903	70
TCGCCGG	4145	0.0	33.43908	48
CCCGTCG	4265	0.0	32.386314	44
CGGCACC	4500	0.0	32.24558	34
CCGTCGC	4365	0.0	31.884764	45
ACCCGCG	4685	0.0	31.373848	25
CCCCCGA	4930	0.0	29.79846	19
CCCCGAC	4930	0.0	29.661055	20
GCACCCC	4975	0.0	29.316944	36
CCCCCGT	4725	0.0	29.145733	42
GTTCCGT	420	0.0	28.968546	1
CCGCGCG	5170	0.0	28.437832	27
CACCCCC	5365	0.0	27.643677	37
GGCACCC	5340	0.0	27.308344	35
AGTCCGC	5605	0.0	26.762672	7
GTCCGTT	355	0.0	26.349003	2
CAGTCCG	5405	0.0	26.278791	6