EGAF00005319204 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319204
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3758159
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13601	0.36190592255410164	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	9779	0.2602071918724035	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9503	0.25286317050449436	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6647	0.17686851461047814	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	5533	0.1472263414081203	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5410	0.14395346232024775	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	5072	0.1349596970218663	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4428	0.11782364716341166	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4098	0.10904275204960726	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4015	0.0	36.218052	32
GCGGCAC	4285	0.0	34.18347	33
CGGCACC	4295	0.0	33.78423	34
TCGCCGG	4105	0.0	33.082516	48
CCGTCGC	4275	0.0	32.062305	45
CCCGTCG	4335	0.0	31.931852	44
CCCCCGA	4690	0.0	31.105307	19
TGGCCGT	1260	0.0	30.829197	70
ACCCGCG	4770	0.0	30.456991	25
CCCCGAC	4825	0.0	30.238226	20
GCACCCC	5030	0.0	28.928158	36
ACGATCG	60	5.2972714E-4	28.866854	6
CCGCGCG	5065	0.0	28.827684	27
CCCCCGT	4835	0.0	28.328709	42
AGTCCGC	5380	0.0	27.62204	7
CAGTCCG	5115	0.0	27.427744	6
CACCCCC	5310	0.0	27.40861	37
ATGGCCG	1140	0.0	26.891777	69
GATAGGC	2905	0.0	26.435854	40
CCCGCGC	5500	0.0	26.354637	26