EGAF00005319207 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319207
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3542214
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	14809	0.41807186127094526	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	12510	0.3531689502666976	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	11607	0.32767641932418534	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	9966	0.2813494610997529	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	8002	0.22590391207307067	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6332	0.17875825684162505	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4492	0.1268133432932059	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGGCC	2210	60.11298	7
TCTACGG	2230	59.880825	5
GTCTACG	2225	59.70603	4
CTACGGC	2320	57.706207	6
GCGCGGT	7140	53.21622	9
CCGAACT	830	51.891537	67
ACGGCCA	2575	51.859425	8
CGGCCAT	2630	50.382324	9
TGGCGCG	7575	50.153854	15
GCCATAC	2625	49.946064	11
GGGTCTA	2115	48.161415	2
CGCGGTG	7935	48.058037	10
CATACCA	2835	46.0075	13
GCCGGTT	950	45.279778	3
CCATACC	2945	44.28905	12
CGGTTCA	965	44.22372	5
CGTGCCT	8635	44.044533	20
GGCCATA	3020	43.875996	10
GAACGCG	3000	43.697563	24
CGGCAAT	295	43.37031	1