EGAF00005319209 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319209
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3520088
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	14731	0.41848385608541605	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	12522	0.35572974312005834	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	11501	0.3267247864257939	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	10025	0.28479401651322356	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7657	0.21752297101663368	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6173	0.1753649340584667	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4442	0.12619002706750512	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	3527	0.10019635872739545	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGGCC	2140	59.678143	7
TCTACGG	2160	58.80683	5
GTCTACG	2200	57.581146	4
CTACGGC	2305	55.256832	6
GCGCGGT	6960	54.402657	9
CCGAACT	1055	51.980995	67
CGGCCAT	2500	51.082314	9
ACGGCCA	2530	50.748703	8
TGGCGCG	7510	50.419155	15
GCCATAC	2570	49.690964	11
CGCGGTG	7790	49.00391	10
CGGTTCA	1150	48.19292	5
GCCGGTT	1170	47.07489	3
CCATACC	2735	46.693153	12
CATACCA	2730	46.527157	13
GGGTCTA	2000	46.48233	2
CCGGTTC	1180	46.384224	4
GGCCATA	2815	45.733017	10
CGAACTT	1275	44.635178	68
TACCACC	2875	44.420036	15