EGAF00005319213 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319213
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3502535
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	14349	0.4096747070336199	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	11929	0.340581892829051	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	10782	0.30783418295605897	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	9754	0.2784840122939528	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	7821	0.22329541317931156	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	6284	0.17941291093450884	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4229	0.12074112035996785	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	2000	60.083218	5
GTCTACG	2035	59.373787	4
TACGGCC	2015	59.293343	7
CTACGGC	2130	56.092865	6
GCGCGGT	6805	52.67131	9
CCGAACT	990	51.76994	67
TGGCGCG	7140	50.14104	15
ACGGCCA	2400	49.925167	8
GCCATAC	2395	49.88563	11
CGGCCAT	2410	49.575138	9
CGGTTCA	1055	48.628574	5
CGGCATA	260	48.043922	1
CGCGGTG	7555	47.715965	10
GCCGGTT	1100	47.56737	3
GGGTCTA	2040	46.415203	2
CCATACC	2610	46.16411	12
CATACCA	2580	45.900314	13
GGCCATA	2700	44.50545	10
CGTGCCT	8270	43.386124	20
GTAGTCC	8415	43.150772	27