EGAF00005319218 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319218
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5161145
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	21214	0.4110328231429266	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	9184	0.17794501026419526	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	6168	0.11950836490739943	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5967	0.11561388025331587	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5678	0.11001434759147437	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	5172	0.10021032154686606	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2380	38.846207	70
CGCGGCA	6545	35.47412	32
GCGGCAC	6925	33.587692	33
TCGCCGG	6785	32.974895	48
CGGCACC	7150	32.585556	34
CCCGTCG	6920	32.170174	44
CCGTCGC	6910	32.025997	45
GACGTAT	485	30.839418	44
ACCCGCG	7950	29.469236	25
CCCCCGA	8075	29.155037	19
GGACGTA	540	28.974504	43
ATGGCCG	2525	28.915173	69
GCACCCC	8185	28.651245	36
CACCCCC	8290	28.212347	37
GTTCCGT	645	27.901047	1
CGTATCA	550	27.218401	46
CCCCGAC	8755	26.853687	20
ACGTATC	560	26.718004	45
GGCACCC	8855	26.55451	35
CGGATAG	575	26.538841	35