FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005319222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2896402
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG100880.3482941939689311No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG54020.18650725969668575No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN44610.15401867558439747No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC34010.11742154576609186No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA32630.11265701377087849No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)