FastQCFastQC Report
Wed 8 May 2024
EGAF00005319223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2896402
Total Bases216.6 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT146270.5050058658984492No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG103420.35706369488765716No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN44500.15363889404854714No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG40020.13817142786118777No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA37770.13040316917333988No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT30990.10699481632729159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)