EGAF00005319238 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319238
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3714772
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18633	0.5015920223367679	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	14893	0.4009128958654798	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8746	0.23543840644863265	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7225	0.19449376704680663	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	6943	0.1869024532326614	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5418	0.14585013562070565	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5172	0.13922792569772788	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	5073	0.1365628899970173	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4616	0.12426065448969681	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3902	0.1050400939815418	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	6380	35.1509	32
TGGCCGT	1620	34.199486	70
GCGGCAC	6570	34.10963	33
CGGCACC	6570	33.60816	34
GTCCGTT	290	31.876036	2
GCACCCC	7060	31.865343	36
ACCCGCG	7105	31.63998	25
TTCCTCG	1005	31.000868	4
CCCCCGA	7300	30.918041	19
CACCCCC	7400	30.19274	37
CCCGTCG	6065	30.025223	44
TCGCCGG	6125	29.77464	48
GGCACCC	7490	29.689938	35
TTATCGG	220	29.568512	7
GTGCCGT	750	29.29809	1
CCGTCGC	6265	29.147427	45
CGCTTCC	1075	28.744492	1
CCCCGAC	7915	28.49318	20
TATCGGA	230	28.282925	8
GTTATCG	230	28.282925	6