EGAF00005319239 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319239
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3714772
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	14841	0.3995130791337934	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	13357	0.3595644631756673	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	11586	0.3118899356407338	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	10987	0.29576512367380825	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	7705	0.20741515226237306	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	5422	0.14595781383083536	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	5341	0.14377733007570856	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	4129	0.1111508324064034	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	2560	60.70844	5
GTCTACG	2565	60.45664	4
TACGGCC	2580	59.83897	7
CTACGGC	2735	56.823986	6
CGGCCAT	2930	52.808517	9
ACGGCCA	2970	52.096592	8
GCCATAC	2985	51.606834	11
GCGCGGT	6415	51.44149	9
CGTCTAC	755	50.78684	3
GCGTCTA	675	50.72377	2
GGGTCTA	2240	50.135014	2
CATACCA	3130	49.326138	13
CCATACC	3145	49.199726	12
TGGCGCG	6970	47.641327	15
GGCCATA	3295	47.063244	10
TACCACC	3390	46.148903	15
CGCGGTG	7195	46.05572	10
GCCGGTT	900	46.028095	3
CCGAACT	900	45.466743	67
GAACGCG	3455	44.214817	24