EGAF00005319244 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319244
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3705569
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	20138	0.5434523011175881	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	14578	0.3934078679954415	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	9382	0.2531864876892051	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7066	0.19068596482753392	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	7054	0.19036212792151488	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5208	0.1405452172122554	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5170	0.13951973367652848	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5016	0.13536382671595104	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4866	0.13131586539071327	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3903	0.1053279536826868	No Hit
TGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3771	0.10176574771647755	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	7095	37.09038	32
GCGGCAC	7245	36.302982	33
CGGCACC	7330	34.82042	34
GCACCCC	7685	33.388023	36
TGGCCGT	1600	33.36364	70
ACCCGCG	7960	33.248154	25
CCCCCGA	8005	32.952213	19
CACCCCC	8115	31.643164	37
TCGCCGG	6640	31.449436	48
GGCACCC	8200	31.35298	35
CCCGTCG	6730	31.343378	44
CCGTCGC	6795	30.963404	45
GATAGGC	2345	30.592531	40
GTTCCGT	395	30.439138	1
CCCCGAC	8735	30.09508	20
TTCCTCG	1135	29.90358	4
AGTCCGC	9235	28.957767	7
TCCGCCC	9710	28.494543	9
TAGTCCG	470	28.449469	6
CAGTCCG	8955	28.408329	6