EGAF00005319245 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319245
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3705569
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	14538	0.3923284116420447	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	13502	0.3643704920890692	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	11238	0.30327326248681374	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	10915	0.2945566524331351	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	8318	0.22447294868885181	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	5482	0.14793949323302305	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	5390	0.14545674362021055	No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT	4144	0.11183167821190212	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCTACG	2640	62.05396	4
TCTACGG	2725	59.993374	5
TACGGCC	2730	59.884308	7
CTACGGC	2820	58.094643	6
ACGGCCA	3040	53.777683	8
GCGTCTA	650	52.199627	2
GCCATAC	3075	52.16246	11
GCGCGGT	6310	51.05706	9
CGGCCAT	3215	50.530624	9
CCGAACT	960	50.421974	67
GGGTCTA	2460	49.458252	2
CATACCA	3265	49.440548	13
CCATACC	3315	48.178562	12
TGGCGCG	6780	47.415318	15
GGCCATA	3445	47.256516	10
GCCGGTT	1025	45.473732	3
CGCGGTG	7125	45.26495	10
TACCACC	3555	45.214607	15
CGTCTAC	810	44.42729	3
CGGTTCA	1080	44.11055	5