EGAF00005319254 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319254
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3786421
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19952	0.5269355943250895	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8491	0.2242487034590184	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7182	0.18967779863887296	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6298	0.16633121356552796	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	6114	0.16147174336926612	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6024	0.15909482859935545	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5981	0.15795919154262034	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5467	0.1443843671900193	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4594	0.12132829392188561	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3970	0.10484835151717149	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3927	0.1037127144604364	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1600	41.281322	70
CGCGGCA	5830	40.09061	32
CGTACTA	115	39.12165	2
GCGGCAC	6000	39.079105	33
CGGCACC	6220	37.539047	34
TCGCCGG	5855	37.209587	48
CCCGTCG	5910	36.918808	44
CCGTCGC	5995	36.52991	45
GTTCCGT	415	35.142624	1
GCACCCC	6725	34.740395	36
GTGCCGT	560	34.72426	1
CCCCCGA	6890	34.39169	19
ACCCGCG	6965	33.95479	25
CACCCCC	6965	33.352352	37
GGCACCC	7180	32.673527	35
ATGGCCG	1695	31.181927	69
CCCCGAC	7685	30.795023	20
TAGTCCG	385	30.541565	6
AGTCCGC	8390	28.483227	7
CAGTCCG	8150	27.921667	6