EGAF00005319258 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319258
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3784538
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	20213	0.534094254041048	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8669	0.22906362678879166	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7351	0.1942377114458885	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6396	0.16900345563976368	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	6228	0.16456434048224644	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	6041	0.1596231825390576	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5948	0.1571658152197177	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5525	0.1459887574123975	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4528	0.11964472281689337	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3971	0.10492694220536297	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3928	0.10379074011147464	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3836	0.10135979609664376	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2035	42.138763	70
GTTCCGT	370	36.596893	1
CGCGGCA	5955	35.875362	32
GCGGCAC	6105	35.003185	33
ATGGCCG	1975	34.527626	69
CGGCACC	6420	33.404446	34
TCGCCGG	6095	33.28705	48
CCGTCGC	6140	32.893147	45
CCCGTCG	6155	32.86562	44
CCCCCGA	7145	30.504229	19
GCACCCC	7100	30.363855	36
ACCCGCG	7120	30.248228	25
CACCCCC	7165	30.197329	37
CGTACGT	195	30.160328	19
GACGTAT	255	30.038363	44
GGCACCC	7420	29.095743	35
TACGGGT	1080	28.500345	6
AGGACCG	580	28.366367	70
TATGGCC	2300	28.30392	68
GTATGGC	2260	28.058674	67