EGAF00005319262 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319262
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3539309
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	14829	0.41898008905128087	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6923	0.19560315304484577	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5531	0.15627344207584024	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5400	0.15257215462114215	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5119	0.14463275176030124	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5043	0.1424854399545222	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	4342	0.12267931395648134	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3667	0.10360779462883855	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3664	0.1035230323207157	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1460	38.526386	70
CGCGGCA	4410	35.20459	32
GCGGCAC	4525	34.397198	33
GTTCCGT	395	33.384422	1
TCGCCGG	4340	33.156727	48
AGGACCG	585	32.622772	70
CCCGTCG	4400	32.56276	44
CGGCACC	4760	32.559364	34
CCGTCGC	4490	31.92413	45
ATGGCCG	1435	30.956038	69
GCACCCC	5225	29.942875	36
CCCCCGA	5210	29.869272	19
CACCCCC	5290	29.320139	37
ACCCGCG	5360	28.988949	25
GGCACCC	5750	27.021837	35
TACGGGT	925	26.533875	6
CGCCCTA	1885	26.506634	61
GTACGGG	940	26.478214	5
CCCCGAC	5915	26.370647	20
TCGCCGT	290	26.325825	1