EGAF00005319266 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319266
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3529060
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	14780	0.4188084079046545	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7045	0.19962822961355148	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5612	0.15902251591075245	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5380	0.15244852736989453	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5128	0.14530781567896267	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5097	0.14442939479634803	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	4319	0.1223838642584711	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	3808	0.10790408777408148	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3657	0.1036253279910231	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1480	0.0	42.429844	70
CGCGGCA	4415	0.0	37.04749	32
GCGGCAC	4565	0.0	36.068657	33
AGGACCG	655	0.0	36.04788	70
TCGCCGG	4365	0.0	35.143272	48
CCCGTCG	4435	0.0	34.751835	44
CCGTCGC	4475	0.0	34.452515	45
CGGCACC	4755	0.0	34.27024	34
ATGGCCG	1605	0.0	30.83036	69
CCCCCGA	5380	0.0	30.778831	19
GCACCCC	5340	0.0	30.666277	36
ACCCGCG	5470	0.0	30.11058	25
CACCCCC	5480	0.0	29.82589	37
GTGCCGT	520	0.0	29.34934	1
GGCACCC	5680	0.0	28.946602	35
CGCCCTA	1870	0.0	28.22152	61
GTTCCGT	475	0.0	27.748468	1
CCCCGAC	5990	0.0	27.53291	20
CGCTTCC	845	0.0	27.50218	1
CGTACTA	130	6.204573E-9	26.583227	2