EGAF00005319274 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319274
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2619325
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	7064	0.2696878012465044	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4168	0.1591249654013916	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	3894	0.14866425510389128	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	3426	0.13079705649356227	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3156	0.12048905729529553	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	3152	0.12033634619606196	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	2693	0.10281274755900853	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGCAC	2125	0.0	37.3559	33
CGCGGCA	2155	0.0	37.1526	32
TGGCCGT	1310	0.0	36.656696	70
TATCGGA	105	1.6370905E-11	36.222767	8
TCGCCGG	2170	0.0	35.473087	48
CCCGTCG	2185	0.0	35.33731	44
CGGCACC	2305	0.0	34.750824	34
GTCCGAT	50	1.8366148E-4	34.5809	2
CCGTCGC	2250	0.0	34.480965	45
GTTATCG	105	6.2937033E-10	32.929787	6
CGCCCTA	1415	0.0	30.79166	61
ACCCGCG	2730	0.0	29.927261	25
CCCCCGA	2800	0.0	29.153437	19
GTTCCGT	230	0.0	28.614927	1
GCACCCC	2830	0.0	28.438084	36
CACCCCC	2900	0.0	28.2377	37
AGTCCGC	2925	0.0	28.01565	7
ATGGCCG	1280	0.0	27.691086	69
GGCACCC	2945	0.0	27.442234	35
CAGTCCG	2865	0.0	27.033457	6