EGAF00005319282 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319282
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3265626
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15465	0.4735692329740148	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	8745	0.26778939168171734	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	8339	0.2553568596036411	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6068	0.18581429716691378	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5007	0.15332435496287694	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4804	0.1471080889238388	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4289	0.13133775882480112	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3792	0.11611862472922496	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3771	0.11547556272518654	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3627	0.11106599469749444	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3492	0.10693202467153312	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3276	0.10031767262999498	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1270	40.055305	70
CGCGGCA	4580	34.55834	32
GCGGCAC	4745	33.446632	33
CGGCACC	4860	32.525143	34
TCGCCGG	4575	32.504887	48
CCGTCGC	4610	32.135445	45
CCCGTCG	4615	32.01268	44
ACCCGCG	5230	30.448414	25
CCCCCGA	5315	30.100445	19
GCACCCC	5280	30.093832	36
ATGGCCG	1355	29.754826	69
CACCCCC	5355	29.425926	37
TACGGGT	955	28.858366	6
CCCCGAC	5620	28.476055	20
GTCGGTT	170	28.37032	4
GGCACCC	5710	27.99774	35
CGCCCTA	1025	27.91012	61
GTACGGG	980	27.770655	5
TCGCCGT	250	27.653877	1
GTCCGTT	290	27.327602	2