EGAF00005319286 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319286
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3474554
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18611	0.5356370918397009	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	10536	0.3032331631628117	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	8542	0.24584450263256807	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7308	0.21032915303661995	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7243	0.20845840933829204	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5748	0.16543130427675035	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4873	0.1402482160300286	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4739	0.13639160594424493	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	4544	0.13077937484926122	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4159	0.11969881602070366	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	4011	0.11543927652297244	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	3646	0.10493433114005424	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5450	38.15645	32
GCGGCAC	5640	36.815327	33
CCCGTCG	5405	36.246563	44
TCGCCGG	5475	35.76303	48
CCGTCGC	5475	35.666855	45
CGGCACC	5840	35.49917	34
CCCCCGA	6160	34.19816	19
TAGTCCG	285	34.029003	6
ACCCGCG	6320	33.35448	25
GCACCCC	6280	33.13691	36
CACCCCC	6370	32.728935	37
GGCACCC	6720	31.013557	35
CCCCGAC	6910	30.53869	20
TGGCCGT	1235	30.282854	70
TTCCTCG	925	29.594793	4
CCGAACG	170	28.657166	44
CGCTTCC	975	28.522902	1
GTCGGTT	245	28.287453	4
GATAGGC	3025	28.276848	40
GCATTAG	3100	27.597599	12