EGAF00005319292 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319292
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3458177
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18954	0.5480922462904588	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	10218	0.2954735977944449	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	8460	0.2446375648210025	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7372	0.21317590163834874	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7202	0.20826001676605913	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5684	0.16436405655349623	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4928	0.14250282735672581	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4706	0.13608326005291227	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	4576	0.13232405397410255	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4133	0.11951383633631246	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	4055	0.11725831268902662	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	3625	0.10482401565911752	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	3563	0.10303116352922362	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5310	37.77592	32
CCCGTCG	5165	36.978474	44
TCGCCGG	5305	36.180023	48
GCGGCAC	5545	36.11813	33
CGGCACC	5650	35.392147	34
CCGTCGC	5415	35.215187	45
GTTCCGT	320	34.923878	1
TGGCCGT	1240	33.967133	70
GCACCCC	6035	33.376034	36
CCCCCGA	6185	32.602753	19
ACCCGCG	6200	32.488205	25
CACCCCC	6255	32.09622	37
GGCACCC	6615	30.495064	35
CCCCGAC	6730	29.913242	20
GTCCGTT	255	29.892761	2
ATGGCCG	1170	29.09161	69
GATAGGC	3065	28.233303	40
GTGCCGT	560	27.440191	1
TCAGGAT	1965	26.982542	70
GCATTAG	3235	26.876326	12