EGAF00005319294 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319294
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3726455
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19305	0.5180526800940841	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10160	0.27264518154653683	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5695	0.1528262115066464	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4978	0.13358540489553744	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4568	0.12258299107328546	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4084	0.10959477573189533	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5735	35.838886	32
GCGGCAC	5930	34.795193	33
TCGCCGG	5710	34.475185	48
CCCGTCG	5715	34.178776	44
CGGCACC	6155	33.541424	34
CCGTCGC	5880	33.29534	45
ACCCGCG	6435	32.30775	25
CCCCCGA	6530	31.707775	19
CCGCGCG	6845	30.556131	27
CCCCGAC	6810	30.466568	20
CCCGCGC	7010	29.818365	26
GCACCCC	7070	29.572512	36
CACCCCC	7130	29.090769	37
TAGTCCG	410	27.696566	6
GGCACCC	7480	27.613789	35
CGTCGCC	7180	27.382082	46
GCGCGGG	7405	27.12974	62
AGTCCGC	7865	26.819927	7
TACGGGT	840	26.627468	6
AGGAGGG	10980	26.610508	70