FastQCFastQC Report
Thu 9 May 2024
EGAF00005319295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3726455
Total Bases278.5 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT155400.41701831901901404No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN101060.2711960831406793No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG47010.12615206677660137No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG46050.12357589183285456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)